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rockefeller cornell mskcc

Advanced Perl for Bioinformatics:
[Course Materials] [Registration closed]

This workshop is divided into two sessions. The workshop aims to introduce participants to modules and object oriented programming of Perl language by using worked examples relevant to sequence analysis and bioinformatics. The workshop will focus on the practical aspects of Perl and its usefulness, and not on computer science or theory. At the end of this workshop, participants will be able to write Perl modules and use biology related modules in public domain.

Organizer: Xuning Wang (RU)

Size: 15


Part 1

  • Module structure
  • Module path
  • Module export
  • Object oriented programming
Part 2
  • Bioperl modules
  • Sequence access
  • Sequence manipulation
  • Parsing BLAST records

Prerequisite: Knowledge of introductory Perl.